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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
total RNA-seq
215
ChIP-seq
134
ATAC-seq
43
single cell RNA-seq
18
pCHi-C
1
DNAme array
Assay category
421
Transcription
215
DNA binding
134
DNA accessibility
1
DNA methylation
Target of assay
167
histone
167
histone modification
91
narrow histone mark
76
broad histone mark
32
control
16
transcription factor
5
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
612
bigWig
609
bam
411
tsv
160
bed narrowPeak
140
tagAlign
44
fastq
2
bed bed3+
Organism
789
Homo sapiens
Biosample type
396
primary cell
239
tissue
132
in vitro differentiated cells
22
cell line
Organ
194
liver
100
pancreas
59
epithelium
4
connective tissue
3
heart
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
591
AMP
198
T1D
Genome assembly (visualization)
625
hg19
532
GRCh38
Lab
509
AMP-T2D consortium
280
Kyle Gaulton, UCSD
Audit category:
98
inconsistent ontology term
BIOSAMPLE
ASSAY
789 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNAme array
primary cell
monocyte
54
85
15
1
1
CD8-positive, alpha-beta T cell
4
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
1
+ See 42 more…
tissue
liver
143
50
islet of Langerhans
42
cardiac atrium
1
cardiac ventricle
1
pancreas
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
cell line
EndoC_BH1
4
1
16
HepG2
1
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