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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
733
total RNA-seq
63
ATAC-seq
58
ChIP-seq
1
pCHi-C
Assay category
733
Transcription
63
DNA accessibility
58
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
5
transcription factor
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
855
bam
811
bigWig
748
tsv
89
txt
58
tagAlign
50
bed narrowPeak
45
fastq
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
855
Homo sapiens
Biosample type
645
tissue
95
cell line
93
primary cell
22
in vitro differentiated cells
Organ
451
connective tissue
386
adipose tissue
194
liver
66
artery
66
blood vessel
66
bone element
66
heart
66
vasculature
26
epithelium
26
pancreas
8
skeleton
6
limb
Project
810
AMP
45
T1D
Genome assembly (visualization)
829
hg19
775
GRCh38
Lab
810
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
52
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
855 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
adipose tissue
381
liver
143
50
bone tissue
58
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 8 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
+ See 21 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
See all biosamples
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