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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
108
ATAC-seq
99
ChIP-seq
16
snATAC-seq
1
Hi-C
1
pCHi-C
Assay category
190
Transcription
124
DNA accessibility
99
DNA binding
1
3D chromatin structure
Target of assay
39
histone
39
histone modification
30
control
29
narrow histone mark
28
transcription factor
10
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
332
bam
304
bigWig
189
tsv
69
bed narrowPeak
64
tagAlign
52
fastq
36
bigBed narrowPeak
4
bed broadPeak
Organism
415
Homo sapiens
Biosample type
231
tissue
155
primary cell
29
cell line
Organ
195
liver
35
blood
35
bodily fluid
16
brain
13
pancreas
8
spleen
1
adipose tissue
1
connective tissue
Project
354
AMP
61
T1D
Genome assembly (visualization)
303
hg19
251
GRCh38
Lab
353
AMP-T2D consortium
61
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
415 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
Hi-C
pCHi-C
tissue
liver
143
50
brain
15
spleen
1
7
islet of Langerhans
1
4
body of pancreas
4
+ See 3 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
peripheral blood mononuclear cell
8
B cell
2
2
+ See 25 more…
cell line
GM12878
27
HepG2
1
1
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