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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
total RNA-seq
100
ATAC-seq
50
ChIP-seq
46
single cell RNA-seq
1
pCHi-C
Assay category
356
Transcription
100
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
445
bam
422
bigWig
351
tsv
50
tagAlign
48
fastq
27
bed narrowPeak
Organism
507
Homo sapiens
Biosample type
313
tissue
193
primary cell
1
cell line
Organ
194
liver
157
pancreas
33
epithelium
connective tissue
Project
462
AMP
45
T1D
Genome assembly (visualization)
422
hg19
369
GRCh38
Lab
462
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
month_released!
September, 2017
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
507 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
islet of Langerhans
120
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic beta cell
9
pancreatic alpha cell
7
+ See 38 more…
cell line
HepG2
1
See all biosamples
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