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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
total RNA-seq
100
ATAC-seq
51
single cell RNA-seq
50
ChIP-seq
2
pCHi-C
Assay category
361
Transcription
100
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
450
bam
427
bigWig
356
tsv
54
fastq
50
tagAlign
27
bed narrowPeak
1
bedpe bed3+
Organism
513
Homo sapiens
Biosample type
313
tissue
198
primary cell
1
cell line
1
in vitro differentiated cells
Organ
194
liver
160
pancreas
36
epithelium
3
connective tissue
1
adipose tissue
Project
468
AMP
45
T1D
Genome assembly (visualization)
427
hg19
374
GRCh38
Lab
468
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
BIOSAMPLE
ASSAY
513 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
islet of Langerhans
120
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic alpha cell
9
pancreatic beta cell
9
+ See 39 more…
cell line
HepG2
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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