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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
348
total RNA-seq
51
single cell RNA-seq
50
ATAC-seq
27
ChIP-seq
18
small RNA-seq
15
RRBS
4
Hi-C
2
FAIRE-seq
Assay category
417
Transcription
52
DNA accessibility
27
DNA binding
15
DNA methylation
4
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
3
control
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
500
bigWig
496
bam
417
tsv
50
fastq
34
bed narrowPeak
27
tagAlign
15
bed bedMethyl
15
bigBed bedMethyl
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
515
Homo sapiens
Biosample type
346
tissue
169
primary cell
Organ
179
liver
159
pancreas
46
epithelium
20
connective tissue
17
brain
17
heart
12
adipose tissue
11
kidney
10
vasculature
9
blood vessel
5
musculature of body
3
artery
2
pericardium
1
eye
Project
470
AMP
45
T1D
Genome assembly (visualization)
515
hg19
450
GRCh38
Lab
470
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
BIOSAMPLE
ASSAY
515 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
tissue
liver
145
27
1
islet of Langerhans
116
1
heart left ventricle
2
2
1
omental fat pad
4
1
subcutaneous adipose tissue
4
1
+ See 20 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 60 more…
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