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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
372
total RNA-seq
246
ChIP-seq
187
DNase-seq
134
ATAC-seq
18
pCHi-C
1
DNAme array
Assay category
372
Transcription
321
DNA accessibility
246
DNA binding
1
DNA methylation
Target of assay
186
histone
186
histone modification
102
narrow histone mark
84
broad histone mark
40
control
20
transcription factor
9
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
778
bam
773
bigWig
370
bed narrowPeak
362
tsv
210
bigBed narrowPeak
189
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
140
tagAlign
Organism
958
Homo sapiens
Biosample type
408
primary cell
396
tissue
132
in vitro differentiated cells
22
cell line
Organ
196
liver
81
kidney
65
pancreas
46
epithelium
43
musculature of body
38
heart
32
limb
30
brain
20
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
2
embryo
1
adipose tissue
1
bone element
1
bone marrow
1
thymus
Project
760
AMP
198
T1D
Genome assembly (visualization)
763
hg19
693
GRCh38
Lab
678
AMP-T2D consortium
280
Kyle Gaulton, UCSD
Audit category:
124
inconsistent ontology term
BIOSAMPLE
ASSAY
958 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
54
85
15
1
1
CD8-positive, alpha-beta T cell
4
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
1
+ See 54 more…
tissue
liver
143
50
islet of Langerhans
36
heart
18
muscle of arm
17
kidney
13
+ See 39 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
cell line
EndoC_BH1
4
1
16
HepG2
1
See all biosamples
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