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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
187
DNase-seq
108
ATAC-seq
96
ChIP-seq
1
pCHi-C
Assay category
295
DNA accessibility
190
Transcription
96
DNA binding
Target of assay
58
histone
58
histone modification
40
narrow histone mark
34
control
18
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
516
bam
484
bigWig
249
bed narrowPeak
216
bigBed narrowPeak
191
bed broadPeak
189
tsv
187
bed bed3+
187
bigBed broadPeak
64
tagAlign
17
fastq
Organism
582
Homo sapiens
Biosample type
379
tissue
202
primary cell
1
cell line
Organ
196
liver
81
kidney
46
brain
43
musculature of body
35
heart
32
limb
20
epithelium
19
connective tissue
18
ureter
9
pancreas
7
eye
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
1
spleen
Project
537
AMP
45
T1D
Genome assembly (visualization)
460
hg19
431
GRCh38
Lab
536
AMP-T2D consortium
45
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
34
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
582 results
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Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
brain
12
15
heart
18
muscle of arm
17
kidney
13
+ See 37 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 46 more…
cell line
HepG2
1
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