Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
total RNA-seq
207
ATAC-seq
50
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
284
Transcription
209
DNA accessibility
50
DNA binding
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
284
bam
263
bigWig
205
tsv
92
bed narrowPeak
77
fastq
50
tagAlign
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
1
bed broadPeak
1
bedpe
1
hic
Organism
550
Homo sapiens
Biosample type
293
tissue
235
primary cell
16
in vitro differentiated cells
7
cell line
Organ
194
liver
61
pancreas
52
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
407
AMP
76
HPAP
68
T1D
Genome assembly (visualization)
308
hg19
244
GRCh38
Lab
399
AMP-T2D consortium
76
Klaus Kaestner, Upenn
68
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
19
inconsistent ontology term
BIOSAMPLE
ASSAY
551 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
143
50
coronary artery
35
islet of Langerhans
5
15
2
1
retina
2
15
pigmented layer of retina
2
12
+ See 7 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
+ See 31 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
HepG2
1
See all biosamples
Download