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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
195
total RNA-seq
100
ATAC-seq
1
pCHi-C
Assay category
195
DNA binding
195
Transcription
100
DNA accessibility
Target of assay
126
histone
126
histone modification
64
narrow histone mark
62
broad histone mark
50
control
19
transcription factor
11
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
433
bam
383
bigWig
194
tsv
145
bed narrowPeak
118
bigBed narrowPeak
50
tagAlign
30
fastq
Organism
491
Homo sapiens
Biosample type
315
tissue
152
primary cell
24
cell line
Organ
199
liver
50
blood vessel
50
vasculature
28
brain
21
heart
18
blood
18
bodily fluid
7
limb
7
musculature of body
7
spleen
5
artery
5
epithelium
5
kidney
2
pancreas
Project
446
AMP
45
T1D
Genome assembly (visualization)
383
hg19
329
GRCh38
Lab
446
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
BIOSAMPLE
ASSAY
491 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
liver
50
143
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 8 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
kidney epithelial cell
5
B cell
2
2
+ See 25 more…
cell line
GM12878
18
HepG2
5
1
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