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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
ChIP-seq
190
total RNA-seq
100
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
219
DNA binding
191
Transcription
110
DNA accessibility
7
DNA methylation
Target of assay
106
histone
106
histone modification
67
transcription factor
55
narrow histone mark
51
broad histone mark
46
control
24
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
649
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
306
October, 2019
227
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
469
bam
422
bigWig
189
tsv
182
bed narrowPeak
155
bigBed narrowPeak
88
fastq
50
tagAlign
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
528
Homo sapiens
Biosample type
313
tissue
153
primary cell
62
cell line
Organ
247
liver
50
blood vessel
50
vasculature
30
brain
heart
15
blood
15
bodily fluid
9
pancreas
9
spleen
7
limb
7
musculature of body
5
artery
5
epithelium
5
kidney
1
adipose tissue
1
connective tissue
Project
483
AMP
45
T1D
Genome assembly (visualization)
413
hg19
367
GRCh38
Lab
483
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
heart
BIOSAMPLE
ASSAY
528 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
pCHi-C
single cell RNA-seq
tissue
liver
54
143
2
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 9 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
kidney epithelial cell
5
B cell
2
2
+ See 26 more…
cell line
HepG2
45
1
1
GM12878
15
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