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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
total RNA-seq
ATAC-seq
50
ChIP-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
1
pCHi-C
Assay category
250
Transcription
50
DNA binding
41
DNA methylation
22
DNA accessibility
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
244
bam
215
bigWig
189
tsv
95
zippedFastqFolder
50
tagAlign
27
bed narrowPeak
7
txt
6
fastq
1
bed bed3+
Organism
364
Homo sapiens
Biosample type
221
tissue
142
primary cell
1
cell line
Organ
214
liver
47
pancreas
41
epithelium
2
musculature of body
Project
224
AMP
95
HPAP
45
T1D
Genome assembly (visualization)
216
hg19
207
GRCh38
Lab
198
AMP-T2D consortium
95
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Audit category:
4
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
364 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
single cell RNA-seq
snATAC-seq
pCHi-C
tissue
liver
163
50
islet of Langerhans
6
skeletal muscle tissue
1
1
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
pancreatic beta cell
16
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 25 more…
cell line
HepG2
1
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