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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ATAC-seq
50
ChIP-seq
41
WGBS
34
single cell RNA-seq
28
total RNA-seq
22
snATAC-seq
Assay category
199
DNA accessibility
62
Transcription
50
DNA binding
41
DNA methylation
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
307
bam
280
bigWig
tsv
134
zippedFastqFolder
65
bed narrowPeak
50
tagAlign
24
fastq
7
txt
1
bed bed3+
Organism
352
Homo sapiens
Biosample type
236
primary cell
116
tissue
Organ
104
pancreas
90
liver
80
epithelium
2
musculature of body
Project
218
AMP
134
HPAP
Genome assembly (visualization)
111
hg19
19
GRCh38
Lab
154
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
files.file_type!
tsv
BIOSAMPLE
ASSAY
352 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
+ See 28 more…
tissue
liver
20
50
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
See all biosamples
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