Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
total RNA-seq
138
ATAC-seq
50
ChIP-seq
34
single cell RNA-seq
22
snATAC-seq
1
pCHi-C
Assay category
250
Transcription
160
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
307
bam
280
bigWig
189
tsv
65
bed narrowPeak
54
zippedFastqFolder
50
tagAlign
24
fastq
7
txt
1
bed bed3+
Organism
461
Homo sapiens
Biosample type
259
tissue
201
primary cell
1
cell line
Organ
234
liver
104
pancreas
epithelium
2
musculature of body
Project
362
AMP
54
HPAP
45
T1D
Genome assembly (visualization)
299
hg19
207
GRCh38
Lab
298
AMP-T2D consortium
69
Kyle Gaulton, UCSD
54
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
Audit category:
8
inconsistent ontology term
1
audit script error
organ_slims!
epithelium
BIOSAMPLE
ASSAY
461 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
tissue
liver
163
20
50
islet of Langerhans
6
18
skeletal muscle tissue
1
1
primary cell
Langerhans cell
33
21
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
+ See 25 more…
cell line
HepG2
1
See all biosamples
Download