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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
190
total RNA-seq
100
ATAC-seq
1
pCHi-C
Assay category
212
DNA binding
190
Transcription
100
DNA accessibility
Target of assay
transcription factor
115
histone
115
histone modification
94
control
66
recombinant protein
65
narrow histone mark
50
broad histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
432
bam
354
bigWig
189
tsv
128
tagAlign
104
bed narrowPeak
80
fastq
76
bigBed narrowPeak
23
bed broadPeak
17
bigBed broadPeak
Organism
503
Homo sapiens
Biosample type
275
tissue
153
primary cell
75
cell line
Organ
268
liver
88
brain
4
epithelium
4
vasculature
2
blood vessel
Project
458
AMP
45
T1D
Genome assembly (visualization)
303
hg19
283
GRCh38
Lab
458
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
503 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
liver
50
143
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
cell line
HepG2
74
1
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