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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
60
ChIP-seq
47
total RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
100
DNA accessibility
60
DNA binding
48
Transcription
1
DNA methylation
Target of assay
57
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
control
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
151
bam
147
bigWig
62
fastq
56
bed narrowPeak
56
bigBed narrowPeak
46
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
210
Homo sapiens
Biosample type
tissue
148
primary cell
62
cell line
Organ
47
liver
15
blood
15
bodily fluid
Project
165
AMP
45
T1D
Genome assembly (visualization)
144
hg19
102
GRCh38
Lab
165
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
210 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
WGBS
pCHi-C
single cell RNA-seq
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
HepG2
45
1
1
GM12878
15
See all biosamples
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