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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
100
ATAC-seq
9
DNase-seq
7
WGBS
2
total RNA-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
120
DNA binding
110
DNA accessibility
7
DNA methylation
3
Transcription
Target of assay
64
transcription factor
29
control
27
histone
27
histone modification
27
narrow histone mark
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
370
bam
340
bigWig
tsv
100
bed narrowPeak
88
fastq
73
bigBed narrowPeak
50
tagAlign
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
240
Homo sapiens
Biosample type
103
primary cell
76
tissue
61
cell line
Organ
103
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
240
AMP
Genome assembly (visualization)
143
hg19
98
GRCh38
Lab
240
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tsv
BIOSAMPLE
ASSAY
240 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
single cell RNA-seq
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 25 more…
tissue
liver
54
2
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
cell line
HepG2
45
1
GM12878
15
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