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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
120
ChIP-seq
100
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
pCHi-C
single cell RNA-seq
Assay category
190
Transcription
120
DNA binding
110
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
29
control
27
histone
27
histone modification
27
narrow histone mark
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
697
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
218
June, 2019
213
August, 2021
204
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
April, 2018
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
370
bam
340
bigWig
189
tsv
100
bed narrowPeak
87
fastq
73
bigBed narrowPeak
50
tagAlign
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
428
Homo sapiens
Biosample type
219
tissue
147
primary cell
62
cell line
Organ
247
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
383
AMP
45
T1D
Genome assembly (visualization)
331
hg19
286
GRCh38
Lab
383
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
April, 2018
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
428 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
pCHi-C
tissue
liver
143
54
2
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
45
1
1
GM12878
15
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