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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
total RNA-seq
152
ChIP-seq
114
ATAC-seq
9
DNase-seq
7
WGBS
2
single cell RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
218
Transcription
152
DNA binding
124
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
59
histone
59
histone modification
42
narrow histone mark
29
control
21
RNA binding protein
17
broad histone mark
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
442
bam
412
bigWig
215
tsv
161
fastq
146
bed narrowPeak
87
bigBed narrowPeak
50
tagAlign
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
csv
Organism
502
Homo sapiens
Biosample type
221
primary cell
219
tissue
62
cell line
Organ
247
liver
79
pancreas
61
epithelium
15
blood
15
bodily fluid
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
457
AMP
45
T1D
Genome assembly (visualization)
403
hg19
358
GRCh38
Lab
457
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
35
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
April, 2018
BIOSAMPLE
ASSAY
502 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
FAIRE-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
+ See 30 more…
tissue
liver
143
54
2
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
cell line
HepG2
45
1
1
GM12878
15
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