Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
190
total RNA-seq
151
ChIP-seq
100
ATAC-seq
7
WGBS
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
297
DNA accessibility
191
Transcription
151
DNA binding
7
DNA methylation
Target of assay
68
transcription factor
46
histone
46
histone modification
38
narrow histone mark
37
control
25
RNA binding protein
16
recombinant protein
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
588
bam
550
bigWig
310
bed narrowPeak
283
bigBed narrowPeak
196
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
189
tsv
88
fastq
50
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
647
Homo sapiens
Biosample type
382
tissue
203
primary cell
62
cell line
Organ
249
liver
81
kidney
43
musculature of body
35
heart
32
brain
32
limb
20
epithelium
19
connective tissue
18
ureter
15
blood
15
bodily fluid
11
pancreas
9
spleen
7
eye
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
Project
602
AMP
45
T1D
Genome assembly (visualization)
518
hg19
496
GRCh38
Lab
602
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
34
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
647 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
single cell RNA-seq
tissue
liver
2
143
54
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 37 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 47 more…
cell line
HepG2
45
1
1
GM12878
15
See all biosamples
Download