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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
total RNA-seq
177
ATAC-seq
120
ChIP-seq
WGBS
35
single cell RNA-seq
22
snATAC-seq
9
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
251
Transcription
209
DNA accessibility
120
DNA binding
Target of assay
64
transcription factor
29
control
27
histone
27
histone modification
27
narrow histone mark
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
709
February, 2021
406
November, 2017
402
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
96
July, 2019
94
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
387
bam
353
bigWig
189
tsv
138
bed narrowPeak
105
fastq
93
zippedFastqFolder
73
bigBed narrowPeak
50
tagAlign
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
txt
1
csv
Organism
581
Homo sapiens
Biosample type
279
tissue
241
primary cell
61
cell line
Organ
286
liver
66
pancreas
39
epithelium
15
blood
15
bodily fluid
7
spleen
2
brain
2
musculature of body
1
adipose tissue
1
connective tissue
Project
443
AMP
93
HPAP
45
T1D
Genome assembly (visualization)
370
hg19
279
GRCh38
Lab
379
AMP-T2D consortium
93
Klaus Kaestner, Upenn
69
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
Audit category:
8
inconsistent ontology term
1
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
WGBS
BIOSAMPLE
ASSAY
581 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
DNase-seq
FAIRE-seq
pCHi-C
tissue
liver
163
20
54
2
islet of Langerhans
6
18
spleen
6
1
body of pancreas
2
brain
2
+ See 4 more…
primary cell
Langerhans cell
33
21
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic alpha cell
22
pancreatic beta cell
13
+ See 29 more…
cell line
HepG2
45
1
GM12878
15
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