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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
90
ChIP-seq
65
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
188
Transcription
90
DNA binding
75
DNA accessibility
7
DNA methylation
Target of assay
63
transcription factor
27
histone
27
histone modification
27
narrow histone mark
21
RNA binding protein
15
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
394
bam
360
bigWig
189
tsv
138
bed narrowPeak
134
zippedFastqFolder
112
fastq
73
bigBed narrowPeak
50
tagAlign
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
1
csv
Organism
360
Homo sapiens
Biosample type
213
tissue
90
primary cell
57
cell line
Organ
242
liver
12
blood
12
bodily fluid
7
pancreas
6
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
315
AMP
45
T1D
Genome assembly (visualization)
351
hg19
286
GRCh38
Lab
295
AMP-T2D consortium
45
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Audit category:
8
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
360 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
liver
143
31
20
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
+ See 20 more…
cell line
HepG2
44
1
GM12878
12
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