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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
total RNA-seq
99
ChIP-seq
3
DNase-seq
1
WGBS
1
pCHi-C
Assay category
143
Transcription
99
DNA binding
3
DNA accessibility
1
DNA methylation
Target of assay
49
transcription factor
27
histone
27
histone modification
27
narrow histone mark
23
control
19
RNA binding protein
16
recombinant protein
5
chromatin remodeller
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
246
bam
222
bigWig
144
tsv
78
bed narrowPeak
53
fastq
51
bigBed narrowPeak
50
tagAlign
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
247
Homo sapiens
Biosample type
200
tissue
47
cell line
Organ
247
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
247
AMP
Genome assembly (visualization)
219
hg19
214
GRCh38
Lab
247
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
247 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
WGBS
pCHi-C
tissue
liver
143
54
2
right lobe of liver
1
cell line
HepG2
45
1
1
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