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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
56
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
191
Transcription
110
DNA accessibility
56
DNA binding
7
DNA methylation
Target of assay
transcription factor
29
control
27
histone
27
histone modification
27
narrow histone mark
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
306
bam
277
bigWig
189
tsv
50
tagAlign
37
bed narrowPeak
24
fastq
10
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
365
Homo sapiens
Biosample type
212
tissue
148
primary cell
5
cell line
Organ
198
liver
7
pancreas
6
spleen
3
blood
3
bodily fluid
2
brain
1
adipose tissue
1
connective tissue
Project
320
AMP
45
T1D
Genome assembly (visualization)
270
hg19
223
GRCh38
Lab
320
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
365 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
pCHi-C
single cell RNA-seq
tissue
liver
143
50
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
GM12878
3
HepG2
1
1
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