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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
total RNA-seq
101
ATAC-seq
ChIP-seq
10
MeRIP-seq
1
DNase-seq
1
pCHi-C
Assay category
194
Transcription
102
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
239
bam
238
bigWig
193
tsv
2
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
307
Homo sapiens
Biosample type
153
primary cell
147
tissue
7
cell line
Organ
144
liver
10
pancreas
6
connective tissue
6
epithelium
Project
262
AMP
45
T1D
Genome assembly (visualization)
239
hg19
194
GRCh38
Lab
252
AMP-T2D consortium
45
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
14
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
307 results
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Clear Filters
total RNA-seq
ATAC-seq
MeRIP-seq
DNase-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
osteoblast
4
1
1
B cell
2
2
+ See 25 more…
tissue
liver
143
islet of Langerhans
4
cell line
EndoC_BH1
6
HepG2
1
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