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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
112
ATAC-seq
65
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
190
Transcription
112
DNA accessibility
65
DNA binding
1
3D chromatin structure
Target of assay
39
histone
39
histone modification
29
narrow histone mark
26
control
10
broad histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
299
bam
274
bigWig
189
tsv
64
tagAlign
39
bed narrowPeak
18
fastq
6
bigBed narrowPeak
5
bed broadPeak
1
bedpe
1
hic
Organism
369
Homo sapiens
Biosample type
221
tissue
147
primary cell
1
cell line
Organ
194
liver
16
brain
10
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Project
324
AMP
45
T1D
Genome assembly (visualization)
276
hg19
223
GRCh38
Lab
318
AMP-T2D consortium
45
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
8
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
369 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
tissue
liver
143
50
brain
15
islet of Langerhans
5
1
body of pancreas
4
cerebellum (Hemisphere)
1
+ See 2 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
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