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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
139
ChIP-seq
108
ATAC-seq
1
pCHi-C
Assay category
192
Transcription
139
DNA binding
108
DNA accessibility
Target of assay
69
histone
69
histone modification
55
control
40
narrow histone mark
29
broad histone mark
15
transcription factor
11
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
374
bam
321
bigWig
191
tsv
84
bed narrowPeak
77
fastq
64
tagAlign
51
bigBed narrowPeak
4
bed broadPeak
Organism
440
Homo sapiens
Biosample type
290
tissue
149
primary cell
1
cell line
Organ
194
liver
58
pancreas
24
adipose tissue
24
connective tissue
16
brain
2
epithelium
1
spleen
Project
395
AMP
45
T1D
Genome assembly (visualization)
320
hg19
268
GRCh38
Lab
394
AMP-T2D consortium
45
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
8
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
440 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
liver
143
50
body of pancreas
33
4
endocrine pancreas
16
brain
15
omental fat pad
11
1
+ See 5 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
HepG2
1
See all biosamples
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