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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ATAC-seq
41
WGBS
35
ChIP-seq
34
single cell RNA-seq
28
total RNA-seq
22
snATAC-seq
1
pCHi-C
Assay category
199
DNA accessibility
62
Transcription
41
DNA methylation
35
DNA binding
Target of assay
27
control
8
histone
8
histone modification
8
narrow histone mark
Date released
214
August, 2021
200
May, 2022
170
February, 2023
162
August, 2017
147
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
107
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
134
zippedFastqFolder
104
bam
73
bigWig
46
bed narrowPeak
31
tagAlign
28
fastq
7
txt
1
bed bed3+
1
tsv
Organism
338
Homo sapiens
Biosample type
236
primary cell
101
tissue
1
cell line
Organ
108
pancreas
80
epithelium
72
liver
2
musculature of body
Project
204
AMP
134
HPAP
Genome assembly (visualization)
306
hg19
GRCh38
Lab
140
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
338 results
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Clear Filters
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
pCHi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
+ See 28 more…
tissue
liver
20
31
20
islet of Langerhans
18
4
6
skeletal muscle tissue
1
1
cell line
HepG2
1
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