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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
265
total RNA-seq
105
ATAC-seq
56
ChIP-seq
48
single cell RNA-seq
1
pCHi-C
Assay category
313
Transcription
105
DNA accessibility
56
DNA binding
Target of assay
29
control
27
histone
27
histone modification
27
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
218
June, 2019
182
February, 2023
176
May, 2022
168
July, 2018
164
May, 2021
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
413
bam
384
bigWig
308
tsv
61
fastq
50
tagAlign
32
bed narrowPeak
5
bigBed narrowPeak
2
bed bed3+
Organism
475
Homo sapiens
Biosample type
319
tissue
155
primary cell
1
cell line
Organ
194
liver
168
pancreas
38
epithelium
2
connective tissue
Project
475
AMP
Genome assembly (visualization)
386
hg19
333
GRCh38
Lab
475
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
475 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
islet of Langerhans
120
6
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic beta cell
2
9
pancreatic alpha cell
2
7
+ See 39 more…
cell line
HepG2
1
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