Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
total RNA-seq
111
ATAC-seq
56
ChIP-seq
3
single cell RNA-seq
1
pCHi-C
Assay category
194
Transcription
111
DNA accessibility
56
DNA binding
Target of assay
29
control
27
histone
27
histone modification
27
narrow histone mark
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
289
bam
260
bigWig
189
tsv
50
tagAlign
27
bed narrowPeak
6
fastq
2
bed bed3+
Organism
362
Homo sapiens
Biosample type
214
tissue
147
primary cell
1
cell line
Organ
194
liver
14
kidney
11
pancreas
epithelium
1
adipose tissue
1
connective tissue
Project
317
AMP
45
T1D
Genome assembly (visualization)
263
hg19
221
GRCh38
Lab
303
AMP-T2D consortium
45
Kyle Gaulton, UCSD
14
Katalin Susztak, Upenn
Audit category:
8
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
362 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
kidney
11
3
islet of Langerhans
6
adipose tissue
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
See all biosamples
Download