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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
total RNA-seq
116
ATAC-seq
29
ChIP-seq
3
single cell RNA-seq
1
pCHi-C
Assay category
194
Transcription
116
DNA accessibility
29
DNA binding
Target of assay
29
control
27
histone
27
histone modification
narrow histone mark
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
267
bam
238
bigWig
189
tsv
23
tagAlign
11
fastq
5
bed narrowPeak
5
bigBed narrowPeak
2
bed bed3+
Organism
340
Homo sapiens
Biosample type
187
tissue
152
primary cell
1
cell line
Organ
167
liver
14
kidney
11
pancreas
5
epithelium
1
adipose tissue
1
connective tissue
Project
295
AMP
45
T1D
Genome assembly (visualization)
241
hg19
207
GRCh38
Lab
281
AMP-T2D consortium
45
Kyle Gaulton, UCSD
14
Katalin Susztak, Upenn
Audit category:
8
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
340 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
23
kidney
11
3
islet of Langerhans
6
adipose tissue
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
cell line
HepG2
1
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