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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
210
total RNA-seq
ATAC-seq
69
ChIP-seq
2
Hi-C
1
pCHi-C
Assay category
210
Transcription
69
DNA binding
2
3D chromatin structure
Target of assay
37
histone
37
histone modification
31
control
31
narrow histone mark
6
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
277
bam
246
bigWig
209
tsv
50
tagAlign
38
bed narrowPeak
6
fastq
2
bed bed3+
2
bedpe bed3+
2
hic
Organism
282
Homo sapiens
Biosample type
219
tissue
47
primary cell
16
cell line
Organ
194
liver
41
pancreas
15
epithelium
Project
237
AMP
45
T1D
Genome assembly (visualization)
250
hg19
240
GRCh38
Lab
237
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
19
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
282 results
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Clear Filters
total RNA-seq
ChIP-seq
Hi-C
pCHi-C
tissue
liver
143
50
islet of Langerhans
19
6
1
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
+ See 22 more…
cell line
EndoC_BH1
1
13
1
HepG2
1
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