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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
total RNA-seq
103
ATAC-seq
83
single cell RNA-seq
50
ChIP-seq
1
pCHi-C
Assay category
295
Transcription
103
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
332
bam
312
bigWig
238
tsv
85
fastq
50
tagAlign
27
bed narrowPeak
19
zippedFastqFolder
Organism
449
Homo sapiens
Biosample type
249
primary cell
199
tissue
1
cell line
Organ
194
liver
58
pancreas
52
epithelium
2
connective tissue
Project
345
AMP
59
HPAP
45
T1D
Genome assembly (visualization)
309
hg19
259
GRCh38
Lab
345
AMP-T2D consortium
59
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
449 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
primary cell
Langerhans cell
40
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic alpha cell
15
2
3
macrophage
11
+ See 35 more…
tissue
liver
143
50
islet of Langerhans
6
cell line
HepG2
1
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