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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
total RNA-seq
111
ATAC-seq
65
ChIP-seq
40
single cell RNA-seq
1
pCHi-C
Assay category
246
Transcription
111
DNA accessibility
65
DNA binding
Target of assay
39
histone
39
histone modification
29
narrow histone mark
26
control
10
broad histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
298
bam
277
bigWig
189
tsv
64
tagAlign
58
fastq
39
bed narrowPeak
19
zippedFastqFolder
6
bigBed narrowPeak
4
bed broadPeak
Organism
423
Homo sapiens
Biosample type
216
tissue
206
primary cell
1
cell line
Organ
194
liver
24
pancreas
19
epithelium
16
brain
1
adipose tissue
1
connective tissue
1
spleen
Project
319
AMP
59
HPAP
45
T1D
Genome assembly (visualization)
273
hg19
224
GRCh38
Lab
318
AMP-T2D consortium
59
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
8
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
423 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
+ See 2 more…
primary cell
Langerhans cell
40
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic alpha cell
15
2
macrophage
11
+ See 27 more…
cell line
HepG2
1
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