Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
29
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
DNA binding
98
Transcription
29
DNA accessibility
1
DNA methylation
Date released
681
February, 2021
291
May, 2020
255
August, 2021
200
May, 2022
189
February, 2023
187
June, 2019
168
July, 2018
145
May, 2021
114
August, 2017
108
July, 2019
64
October, 2019
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
43
November, 2019
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
May, 2023
8
December, 2019
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
107
bam
96
bigWig
94
tsv
13
bed narrowPeak
2
bed bed3+
Organism
145
Homo sapiens
Biosample type
in vitro differentiated cells
85
primary cell
40
tissue
20
cell line
Organ
57
pancreas
20
epithelium
2
heart
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
77
AMP
68
T1D
Genome assembly (visualization)
109
hg19
107
GRCh38
Lab
74
AMP-T2D consortium
71
Kyle Gaulton, UCSD
Audit category:
21
inconsistent ontology term
assay_slims!
DNA binding
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
145 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
52
13
1
1
CD8-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
4
16
See all biosamples
Download