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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
total RNA-seq
34
ATAC-seq
18
pCHi-C
3
single cell RNA-seq
1
DNAme array
Assay category
185
Transcription
DNA binding
34
DNA accessibility
1
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
189
bam
183
bigWig
176
tsv
13
bed narrowPeak
4
fastq
2
bed bed3+
1
bedpe bed3+
Organism
238
Homo sapiens
Biosample type
90
in vitro differentiated cells
88
primary cell
40
tissue
20
cell line
Organ
60
pancreas
25
epithelium
3
connective tissue
3
heart
2
embryo
1
adipose tissue
1
bone element
1
bone marrow
1
thymus
Project
170
AMP
68
T1D
Genome assembly (visualization)
196
hg19
189
GRCh38
Lab
157
AMP-T2D consortium
81
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
238 results
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total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
DNAme array
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
5
5
induced pluripotent stem cell
9
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
+ See 10 more…
primary cell
monocyte
52
13
1
1
CD8-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
pancreatic alpha cell
2
B cell
1
+ See 13 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
4
16
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