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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
total RNA-seq
34
ATAC-seq
17
pCHi-C
9
DNase-seq
7
WGBS
1
DNAme array
1
FAIRE-seq
1
single cell RNA-seq
Assay category
DNA binding
183
Transcription
44
DNA accessibility
8
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
203
bam
197
bigWig
173
tsv
23
bed narrowPeak
18
fastq
11
bed bed3+
10
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
252
Homo sapiens
Biosample type
89
in vitro differentiated cells
86
primary cell
56
tissue
21
cell line
Organ
64
pancreas
22
epithelium
4
liver
3
connective tissue
3
heart
3
spleen
2
brain
2
embryo
1
adipose tissue
1
bone element
1
bone marrow
1
thymus
Project
184
AMP
68
T1D
Genome assembly (visualization)
203
hg19
202
GRCh38
Lab
171
AMP-T2D consortium
81
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
252 results
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total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
WGBS
DNAme array
FAIRE-seq
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
5
5
induced pluripotent stem cell
9
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
+ See 9 more…
primary cell
monocyte
52
13
1
1
CD8-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 12 more…
tissue
islet of Langerhans
36
body of pancreas
2
2
pancreas
1
2
1
spleen
1
2
brain
2
+ See 6 more…
cell line
EndoC_BH1
4
16
HepG2
1
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