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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
20
ATAC-seq
1
Hi-C
Assay category
Transcription
123
DNA binding
20
DNA accessibility
1
3D chromatin structure
Target of assay
116
histone
116
histone modification
64
broad histone mark
52
narrow histone mark
4
transcription factor
3
control
Date released
281
November, 2017
201
October, 2019
187
August, 2017
187
June, 2019
141
May, 2021
97
May, 2019
77
December, 2017
72
May, 2020
71
November, 2018
65
April, 2019
46
September, 2018
45
August, 2021
45
February, 2023
45
October, 2018
39
May, 2022
39
November, 2019
30
December, 2018
29
February, 2021
26
July, 2019
21
January, 2019
19
March, 2020
16
February, 2018
13
October, 2017
7
September, 2017
3
January, 2018
3
March, 2019
3
October, 2022
2
November, 2020
Available data
133
bed narrowPeak
128
bigWig
103
bam
89
tagAlign
1
bedpe
1
hic
Organism
144
Homo sapiens
Biosample type
130
primary cell
10
in vitro differentiated cells
3
tissue
1
cell line
Organ
6
pancreas
3
epithelium
Project
85
T1D
59
AMP
Genome assembly (visualization)
144
hg19
105
GRCh38
Lab
122
Kyle Gaulton, UCSD
19
AMP-T2D consortium
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
144 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
33
in vitro differentiated cells
embryonic stem cell
5
cardiomyocytes
3
pancreatic PP cell
2
tissue
islet of Langerhans
2
1
cell line
EndoC_BH1
1
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