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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
152
ChIP-seq
30
ATAC-seq
2
Capture-C
2
Hi-C
Assay category
190
Transcription
152
DNA binding
30
DNA accessibility
2
3D chromatin structure
Target of assay
134
histone
134
histone modification
71
broad histone mark
63
narrow histone mark
15
transcription factor
3
control
1
RNA binding protein
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
349
bigWig
316
bam
188
tsv
174
bed narrowPeak
104
tagAlign
7
bed bed3+
2
hic
1
bedpe bed3+
Organism
376
Homo sapiens
Biosample type
187
primary cell
122
in vitro differentiated cells
39
tissue
28
cell line
Organ
43
pancreas
18
liver
12
epithelium
10
embryo
5
connective tissue
3
heart
1
kidney
Project
240
AMP
136
T1D
Genome assembly (visualization)
381
GRCh38
376
hg19
Lab
181
AMP-T2D consortium
175
Kyle Gaulton, UCSD
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
Audit category:
73
inconsistent ontology term
BIOSAMPLE
ASSAY
376 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
primary cell
monocyte
51
84
13
CD8-positive, alpha-beta T cell
2
33
hepatocyte
3
embryonic stem cell
1
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
12
10
induced pluripotent stem cell
9
embryonic stem cell
5
adipocyte
1
1
+ See 13 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
kidney
1
cell line
HepG2
14
1
H1-hESC
8
EndoC_BH1
4
1
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