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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
total RNA-seq
84
RNA microarray
20
ATAC-seq
4
ChIP-seq
1
pCHi-C
Assay category
117
Transcription
20
DNA accessibility
4
DNA binding
Target of assay
3
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
128
February, 2021
90
May, 2021
26
June, 2019
23
October, 2019
22
November, 2019
17
March, 2020
11
February, 2023
8
May, 2020
6
July, 2018
6
November, 2020
4
December, 2017
3
August, 2021
3
May, 2019
2
December, 2019
2
July, 2019
1
February, 2020
1
June, 2018
Available data
125
bam
125
bigWig
117
tsv
84
txt
4
bed narrowPeak
3
tagAlign
Organism
226
Homo sapiens
Biosample type
86
in vitro differentiated cells
84
tissue
47
cell line
9
primary cell
Organ
84
bone element
48
epithelium
47
pancreas
2
embryo
Project
220
AMP
6
T1D
Genome assembly (visualization)
125
hg19
121
GRCh38
Lab
221
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
226
inconsistent ontology term
32
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
226 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
cardiac precursors (cardiac muscle cell)
18
cardiomyocytes (cardiac muscle cell)
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
+ See 3 more…
tissue
bone element
84
cell line
EndoC_BH1
30
16
1
primary cell
naive B cel
2
2
1
central memory CD8-positive, alpha-beta T cell
2
2
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