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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
67
total RNA-seq
40
single cell RNA-seq
17
pCHi-C
3
ATAC-seq
Assay category
107
Transcription
85
DNA binding
3
DNA accessibility
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
153
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
Available data
139
bigWig
136
bam
85
bed narrowPeak
84
tagAlign
51
tsv
41
fastq
19
zippedFastqFolder
Organism
212
Homo sapiens
Biosample type
210
primary cell
1
cell line
1
tissue
Organ
20
epithelium
20
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
153
T1D
59
HPAP
Genome assembly (visualization)
139
GRCh38
136
hg19
Lab
152
Kyle Gaulton, UCSD
59
Klaus Kaestner, Upenn
1
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
award.project!
AMP
BIOSAMPLE
ASSAY
212 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
ATAC-seq
primary cell
monocyte
84
51
1
Langerhans cell
40
pancreatic alpha cell
15
2
CD4-positive, alpha-beta T cell
2
pancreatic beta cell
1
1
+ See 13 more…
cell line
EndoC_BH1
1
tissue
thymus
1
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