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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
80
ChIP-seq
34
ATAC-seq
3
single cell RNA-seq
1
DNAme array
1
pCHi-C
Assay category
134
Transcription
80
DNA binding
34
DNA accessibility
1
DNA methylation
Target of assay
55
histone
55
histone modification
32
broad histone mark
23
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
170
bigWig
144
bam
125
tsv
48
bed narrowPeak
6
tagAlign
4
fastq
2
bed bed3+
1
bedpe bed3+
Organism
250
Homo sapiens
Biosample type
133
in vitro differentiated cells
58
primary cell
39
tissue
20
cell line
Organ
63
pancreas
28
epithelium
3
heart
2
connective tissue
2
embryo
1
adipose tissue
Project
250
AMP
153
T1D
Genome assembly (visualization)
183
hg19
143
GRCh38
Lab
167
AMP-T2D consortium
83
Kyle Gaulton, UCSD
Audit category:
88
inconsistent ontology term
BIOSAMPLE
ASSAY
250 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNAme array
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 11 more…
primary cell
CD8-positive, alpha-beta T cell
2
33
monocyte
1
1
13
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
pancreatic alpha cell
2
embryonic stem cell
1
+ See 2 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
cell line
EndoC_BH1
4
16
See all biosamples
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