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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
676
total RNA-seq
88
ChIP-seq
84
RNA microarray
56
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
1
DNAme array
Assay category
682
Transcription
88
DNA binding
56
DNA accessibility
1
DNA methylation
Target of assay
55
histone
55
histone modification
32
broad histone mark
23
narrow histone mark
21
transcription factor
12
control
5
RNA binding protein
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
718
bigWig
713
bam
675
tsv
89
txt
71
bed narrowPeak
14
tagAlign
6
csv
4
bed bed3+
4
bed bedgraph
2
bed bed3
Organism
916
Homo sapiens
Biosample type
584
tissue
158
in vitro differentiated cells
116
cell line
58
primary cell
Organ
456
connective tissue
386
adipose tissue
150
bone element
86
pancreas
69
heart
66
artery
66
blood vessel
66
vasculature
51
epithelium
8
kidney
8
skeleton
6
limb
3
liver
2
embryo
Project
916
AMP
153
T1D
45
HPAP
Genome assembly (visualization)
754
hg19
708
GRCh38
Lab
833
AMP-T2D consortium
83
Kyle Gaulton, UCSD
Audit category:
216
inconsistent ontology term
5
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
916 results
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Clear Filters
total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
DNAme array
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
36
kidney
5
+ See 17 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
cardiac precursors (cardiac muscle cell)
18
induced pluripotent stem cell
9
adipocyte
4
4
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
30
16
HepG2
1
1
iPSC derived cell line
2
primary cell
CD8-positive, alpha-beta T cell
2
33
monocyte
1
1
13
1
osteoblast
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
embryonic stem cell
1
+ See 1 more…
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