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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
316
ChIP-seq
16
ATAC-seq
4
total RNA-seq
Assay category
316
DNA binding
16
DNA accessibility
4
Transcription
Target of assay
241
transcription factor
66
recombinant protein
56
control
34
RNA binding protein
16
histone
16
histone modification
15
chromatin remodeller
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
319
bam
315
fastq
273
bigWig
250
bed narrowPeak
249
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
4
tsv
3
tar
Organism
336
Homo sapiens
Biosample type
336
cell line
215
primary cell
132
in vitro differentiated cells
122
tissue
Organ
315
liver
21
epithelium
21
pancreas
Project
335
AMP
1
T1D
Genome assembly (visualization)
271
hg19
222
GRCh38
Lab
336
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
336 results
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ChIP-seq
ATAC-seq
total RNA-seq
cell line
HepG2
315
EndoC_BH1
1
16
4
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