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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
139
total RNA-seq
18
ATAC-seq
16
pCHi-C
1
DNAme array
Assay category
164
DNA binding
139
Transcription
18
DNA accessibility
1
DNA methylation
Target of assay
139
histone
139
histone modification
76
broad histone mark
63
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
338
May, 2021
147
May, 2020
134
May, 2022
127
August, 2017
104
February, 2023
74
February, 2021
73
September, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
August, 2021
43
April, 2018
43
December, 2017
42
October, 2019
39
February, 2018
31
July, 2019
9
March, 2020
9
November, 2017
8
January, 2021
7
August, 2020
7
December, 2019
6
November, 2020
5
May, 2019
5
November, 2019
5
September, 2017
4
August, 2018
4
January, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
260
bigWig
234
bam
132
bed narrowPeak
131
tsv
90
tagAlign
2
bed bed3+
Organism
338
Homo sapiens
Biosample type
206
primary cell
132
in vitro differentiated cells
40
tissue
21
cell line
Organ
5
epithelium
3
pancreas
2
connective tissue
2
embryo
1
bone element
1
bone marrow
1
heart
Project
187
AMP
151
T1D
Genome assembly (visualization)
273
hg19
233
GRCh38
Lab
233
Kyle Gaulton, UCSD
105
AMP-T2D consortium
Audit category:
69
inconsistent ontology term
BIOSAMPLE
ASSAY
338 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
85
52
13
1
1
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
B cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
embryonic stem cell
1
erythroblast
1
inflammatory macrophage
1
macrophage
1
megakaryocyte
1
naive B cel
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
37
5
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
endothelial cell
1
hematopoietic multipotent progenitor cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
smooth muscle cell
1
stem cell
1
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