Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
55
total RNA-seq
48
single cell RNA-seq
16
pCHi-C
13
ATAC-seq
1
DNAme array
Assay category
121
DNA binding
103
Transcription
13
DNA accessibility
1
DNA methylation
Target of assay
118
histone
118
histone modification
66
broad histone mark
52
narrow histone mark
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
219
bigWig
197
bam
127
bed narrowPeak
100
tsv
84
tagAlign
48
fastq
2
bed bed3+
Organism
254
Homo sapiens
Biosample type
254
primary cell
160
tissue
132
in vitro differentiated cells
21
cell line
Organ
37
pancreas
33
epithelium
3
connective tissue
1
bone element
1
bone marrow
Project
151
T1D
103
AMP
Genome assembly (visualization)
232
hg19
197
GRCh38
Lab
186
Kyle Gaulton, UCSD
68
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
BIOSAMPLE
ASSAY
254 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
ATAC-seq
DNAme array
primary cell
monocyte
85
52
1
13
1
CD8-positive, alpha-beta T cell
33
2
1
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
pancreatic cell
3
pancreatic ductal cell
3
pancreatic polypeptide-secreting cell
3
CD4-positive, alpha-beta T cell
2
co-expressing pancreatic endocrine cell
2
endothelial cell
2
mast cell
2
neutrophil
1
1
pancreatic epsilon cell
2
pancreatic stellate cell
2
unclassified pancreatic endocrine cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
embryonic stem cell
1
erythroblast
1
inflammatory macrophage
1
macrophage
1
megakaryocyte
1
mesenchymal cell
1
naive B cel
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
unclassified exocrine cell
1
See all biosamples
Download