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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
21
ATAC-seq
17
pCHi-C
9
total RNA-seq
1
DNAme array
Assay category
66
DNA binding
21
DNA accessibility
9
Transcription
1
DNA methylation
Target of assay
54
histone
54
histone modification
32
broad histone mark
22
narrow histone mark
12
transcription factor
control
5
RNA binding protein
Date released
266
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
114
May, 2021
110
August, 2017
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
8
January, 2018
7
August, 2020
7
October, 2017
5
December, 2019
5
March, 2023
5
November, 2020
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
300
bigWig
bam
173
tsv
133
bed narrowPeak
89
tagAlign
2
bed bed3+
Organism
114
Homo sapiens
Biosample type
54
primary cell
42
in vitro differentiated cells
16
cell line
2
tissue
Organ
17
pancreas
16
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
97
AMP
17
T1D
Genome assembly (visualization)
37
hg19
Lab
92
Kyle Gaulton, UCSD
22
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
files.file_type!
bam
target.investigated_as!
control
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
primary cell
CD8-positive, alpha-beta T cell
30
1
2
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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in vitro differentiated cells
embryonic stem cell
32
5
5
cell line
EndoC_BH1
16
tissue
pancreas
1
thymus
1
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