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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
ATAC-seq
17
pCHi-C
9
total RNA-seq
1
DNAme array
Assay category
62
DNA binding
9
Transcription
1
DNA methylation
Target of assay
54
histone
54
histone modification
32
broad histone mark
22
narrow histone mark
transcription factor
8
control
5
RNA binding protein
Date released
193
August, 2021
139
February, 2021
129
August, 2017
117
May, 2022
102
February, 2023
89
May, 2021
56
September, 2020
48
October, 2019
47
September, 2023
44
March, 2020
35
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
13
November, 2017
10
November, 2020
7
October, 2017
5
December, 2019
5
January, 2018
5
March, 2023
4
July, 2018
4
May, 2023
4
October, 2022
3
May, 2020
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
March, 2019
1
November, 2018
1
September, 2018
Available data
294
bigWig
bam
173
tsv
116
bed narrowPeak
86
tagAlign
2
bed bed3+
Organism
89
Homo sapiens
Biosample type
57
primary cell
30
in vitro differentiated cells
2
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
1
pancreas
1
thymus
Project
72
AMP
17
T1D
Genome assembly (visualization)
35
hg19
Lab
83
Kyle Gaulton, UCSD
6
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bam
target.investigated_as!
transcription factor
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
89 results
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Clear Filters
ChIP-seq
pCHi-C
total RNA-seq
DNAme array
primary cell
CD8-positive, alpha-beta T cell
33
1
2
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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in vitro differentiated cells
embryonic stem cell
25
5
tissue
pancreas
1
thymus
1
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