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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
5
total RNA-seq
2
ATAC-seq
2
Hi-C
Assay category
38
DNA binding
5
Transcription
2
3D chromatin structure
2
DNA accessibility
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
6
control
5
RNA binding protein
Date released
43
May, 2021
20
August, 2017
20
August, 2021
13
February, 2023
9
December, 2017
8
February, 2018
6
March, 2020
5
November, 2019
4
February, 2021
4
October, 2019
2
December, 2019
1
August, 2018
Available data
bigWig
89
bam
81
tsv
7
bed narrowPeak
6
tagAlign
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
Organism
47
Homo sapiens
Biosample type
84
tissue
47
in vitro differentiated cells
46
primary cell
26
cell line
Organ
1
epithelium
1
pancreas
Project
47
AMP
Genome assembly (visualization)
4
hg19
2
GRCh38
Lab
42
Kyle Gaulton, UCSD
5
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
in vitro differentiated cells
embryonic stem cell
37
5
cardiac precursors (cardiac muscle cell)
1
1
cardiomyocytes (cardiac muscle cell)
1
1
pancreatic PP cell
1
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