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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
33
ATAC-seq
17
pCHi-C
7
total RNA-seq
1
DNAme array
1
Hi-C
Assay category
42
DNA binding
33
DNA accessibility
7
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
5
RNA binding protein
Date released
186
February, 2023
180
May, 2022
164
August, 2021
150
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
80
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
30
November, 2019
29
October, 2018
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
14
March, 2020
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
1
September, 2018
Available data
bigWig
278
bam
tsv
133
bed narrowPeak
90
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
101
Homo sapiens
Biosample type
43
in vitro differentiated cells
35
primary cell
16
cell line
7
tissue
Organ
23
pancreas
17
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
84
AMP
17
T1D
Genome assembly (visualization)
16
hg19
15
GRCh38
Lab
60
Kyle Gaulton, UCSD
36
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
17
inconsistent ontology term
files.file_type!
bigWig
tsv
BIOSAMPLE
ASSAY
101 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
Hi-C
in vitro differentiated cells
embryonic stem cell
37
5
pancreatic PP cell
1
primary cell
monocyte
1
13
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
B cell
1
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cell line
EndoC_BH1
16
tissue
islet of Langerhans
4
1
pancreas
1
thymus
1
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